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ChimeraX Developer Tutorial
Command and Python recipes
Setting Up a ChimeraX Development Environment
Obtaining Code
Compiling ChimeraX
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IDEs, Debugging, and Profiling
Code Conventions
Testing
ChimeraX Startup
Building and Distributing Bundles
Intro to ChimeraX Design
Supported and Experimental APIs
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Python Classes
C++ Libraries
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ChimeraX Developer Tutorial
Command and Python recipes
Setting Up a ChimeraX Development Environment
Obtaining Code
Compiling ChimeraX
IDEs, Debugging, and Profiling
Code Conventions
Testing
ChimeraX Startup
Building and Distributing Bundles
Intro to ChimeraX Design
Supported and Experimental APIs
Python Modules
Python Functions implementing User Commands
Python Classes
C++ Libraries
Included third-party packages
System Settings
Light
Dark
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Section Navigation
atomic: Atomic structures
mmcif: Read and write mmCIF files
Writing mmCIF Files in ChimeraX
ChimeraX Fast mmCIF Guidelines
pdb: Read and write PDB files
commands: Register user commands
tools: Manage running tool instances
toolshed: Manage installed and available tools
models: Displayed data
objects: Manage objects
session: Application session support
fetch: Retrieve files from a network source
history: Application history support
safesave: Safely write files
serialize: Support serialization of “simple” types
settings: Save/access tool interface values
data_events: Support for bulk tracking of data changes
logger: Application log support
tasks: Task creation and monitoring
triggerset: Support for managing triggers and handlers
orderedset: An ordered set
utils: Generically useful stuff that doesn’t fit elsewhere
io: Generic I/O support
geometry: Points and coordinate systems
graphics: Rendering using OpenGL
open_command: Register file openers and database fetch
save_command: Register file saving
surface: Triangulated surface calculations
gui: Main ChimeraX graphical user interface
html_scheme
toolbar
map: Density maps
map_fit: Fit atomic models in density maps
segment: Segmentations of density maps
Intro to ChimeraX Design
Infrastructure
safesave: Safely write files
safesave: Safely write files
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